Cortex CA1
SRA SRA573548
SRS 6971 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 6,286
Number of exp. genes 29,662 (median number of expressed genes per cell=2121)
Number of clusters 12
Tissue Cortex CA1
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Cortex CA1|developmental stage=p60|cell type=CA1 inhibitory cells|cell class=Unknown|;GSM2663732: 10X38_2_TTTGCATGGTACGT; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 41.4 Mb)
data download (RPKM, R sparse data object, 121.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Microglia, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.