SRA | SRA578634 |
SRS | SRS2302658 |
SRR | SRR5725936 |
Species | Mus musculus |
Sample (strain, genotype, etc.) | |
Tumor | |
Protocol | 10x chromium |
Instrument | Illumina HiSeq 2500 |
Full-length mRNA-seq | No |
Number of cells | 213 |
Number of exp. genes | 18,251 (median number of expressed genes per cell=1510) |
Number of clusters | 3 |
Tissue | Subventricular zone |
Cell line (Y/N) | No |
Primary adult tissue (Y/N) | Yes |
Target cell population | |
Metadata (raw) | source_name=subventricular zone|transgenic line=aSMACreERt2::Rosa26-tdTomato x B6;129S-Sox2tm2Hoch/J|facs strategy=tdTomato-negative/GFP-positive|library preparation=10X Genomics Single Cell RNAseq v2|strain background=C57/Bl6(3/4) x 129S1SvlmJ(1/4)| |
Gene search |
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Download |
Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ] |
Putative cell types | Ependymal cells, Microglia list all |