Subventricular zone
SRA SRA578634
SRS SRS2302659
SRR SRR5725937
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 246
Number of exp. genes 19,326 (median number of expressed genes per cell=1534)
Number of clusters 2
Tissue Subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=subventricular zone|transgenic line=aSMACreERt2::Rosa26-tdTomato x B6;129S-Sox2tm2Hoch/J|facs strategy=tdTomato-negative/GFP-positive|library preparation=10X Genomics Single Cell RNAseq v2|strain background=C57/Bl6(3/4) x 129S1SvlmJ(1/4)|
Gene search
Download Count matrix (raw read counts, R sparse data object, 1.2 Mb)
Cell clustering results
Putative cell types Neuroblasts, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.