Subventricular zone
SRA SRA578634
SRS SRS2302660
SRR SRR5725938
Species Mus musculus
Sample (strain, genotype, etc.) C57/Bl6(3/4) x 129S1SvlmJ(1/4)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,076
Number of exp. genes 22,525 (median number of expressed genes per cell=1250)
Number of clusters 6
Tissue Subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=subventricular zone|transgenic line=aSMACreERt2::Rosa26-tdTomato x B6;129S-Sox2tm2Hoch/J|facs strategy=tdTomato-negative/GFP-positive|library preparation=10X Genomics Single Cell RNAseq v2|strain background=C57/Bl6(3/4) x 129S1SvlmJ(1/4)|
Gene search
Download Count matrix (raw read counts, R sparse data object, 4.0 Mb)
Cell clustering results
Putative cell types Bergmann glia, Ependymal cells, Neuroblasts, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.