Subventricular zone
| SRA | SRA578634 |
| SRS | SRS2302660 |
| SRR | SRR5725938 |
| Species | Mus musculus |
| Sample (strain, genotype, etc.) | C57/Bl6(3/4) x 129S1SvlmJ(1/4) |
| Tumor | |
| Protocol | 10x chromium |
| Instrument | Illumina HiSeq 2500 |
| Full-length mRNA-seq | No |
| Number of cells | 1,076 |
| Number of exp. genes | 22,525 (median number of expressed genes per cell=1250) |
| Number of clusters | 8 |
| Tissue | Subventricular zone |
| Cell line (Y/N) | No |
| Primary adult tissue (Y/N) | Yes |
| Target cell population | |
| Metadata (raw) | source_name=subventricular zone|transgenic line=aSMACreERt2::Rosa26-tdTomato x B6;129S-Sox2tm2Hoch/J|facs strategy=tdTomato-negative/GFP-positive|library preparation=10X Genomics Single Cell RNAseq v2|strain background=C57/Bl6(3/4) x 129S1SvlmJ(1/4)| |
| Gene search |
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| Download |
Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ] |
| Putative cell types | Astrocytes, Ependymal cells, Neural stem/precursor cells, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all |
2d projection view
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Gene not found. It could be because it has no detectable expression or the gene does not exist.