Hippocampus (24h Sham surgery)
SRA SRA592147
SRS SRS2384613
SRR SRR5868575
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,258
Number of exp. genes 20,952 (median number of expressed genes per cell=956)
Number of clusters 10
Tissue Hippocampus (24h Sham surgery)
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Mus musculus hippocampus 24h Sham surgery, 10 weeks|strain/background=C57BL/6|injury=Sham|tissue=hippocampus|age=10 weeks|;GSM2718318: Mouse hippocampus 24h Sham2; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 7.2 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Macrophages, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.