Hepatocellular carcinoma
SRA SRA608353
SRS SRS2517519
SRR SRR6039142
Species Homo sapiens
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,230
Number of exp. genes 21,966 (median number of expressed genes per cell=2433)
Number of clusters 5
Tissue Hepatocellular carcinoma
Cell line (Y/N) Yes
Primary adult tissue (Y/N) No
Target cell population HuH-1
Metadata (raw) source_name=HuH-1|cell surface marker=random|cell number=899|cell type=hepatocellular carcinoma|cell line=HuH-1|;GSM2785126: single cells from HuH-1 cells; Homo sapiens; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 26.0 Mb)
Cell clustering results
Putative cell types Oval cells, Undefined liver cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.