Hepatocellular carcinoma
SRA SRA608353
SRS SRS2517521
SRR SRR6039143
Species Homo sapiens
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 2,350
Number of exp. genes 25,599 (median number of expressed genes per cell=2778)
Number of clusters 5
Tissue Hepatocellular carcinoma
Cell line (Y/N) Yes
Primary adult tissue (Y/N) No
Target cell population HuH-7
Metadata (raw) source_name=HuH-7|cell surface marker=random|cell number=2068|cell type=hepatocellular carcinoma|cell line=HuH-7|;GSM2785127: single cells from HuH-7 cells; Homo sapiens; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 16.8 Mb)
Cell clustering results
Putative cell types Oval cells, Undefined liver cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.