Medial amygdala
SRA SRA609165
SRS SRS2523504
SRR SRR6049390
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,161
Number of exp. genes 22,757 (median number of expressed genes per cell=993)
Number of clusters 7
Tissue Medial amygdala
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Medial amygdala|strain=C57BL/6J|age=8 weeks|Sex=male|treatment group=naïve control mice|tissue=Medial amygdala (MeA)|single-cell dissociation method=Act-Seq|;GSM2787211: Sample3_MeA_CTL_3; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 7.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Microglia, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.