Medial amygdala
SRA SRA609165
SRS SRS2523520
SRR SRR6049406
Species Mus musculus
Sample (strain, genotype, etc.) C57BL/6J
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,134
Number of exp. genes 23,529 (median number of expressed genes per cell=1057)
Number of clusters 7
Tissue Medial amygdala
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Medial amygdala|strain=C57BL/6J|age=8 weeks|Sex=male|treatment group=seizure-affected mice|tissue=Medial amygdala (MeA)|single-cell dissociation method=Conventional|;GSM2787227: Sample19_MeA_SZ_C; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 5.9 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.