Caudal ganglionic eminence
SRA SRA611700
SRS SRS2532367
SRR SRR6061125
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 7,545
Number of exp. genes 29,087 (median number of expressed genes per cell=2218)
Number of clusters 15
Tissue Caudal ganglionic eminence
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Caudal ganglionic eminence|strain=Lhx6(BAC)-GFP|mouse stage=E13.5|library cell barcode bases=1-16|library molecular barcode bases=17-25|
Gene search
Download Count matrix (raw read counts, R sparse data object, 39.7 Mb)
Cell clustering results
Putative cell types Erythroid-like and erythroid precursor cells, Immature neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.