Medial ganglionic eminence
SRA SRA611700
SRS SRS2532368
SRR SRR6061126
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 6,852
Number of exp. genes 28,313 (median number of expressed genes per cell=2094)
Number of clusters 13
Tissue Medial ganglionic eminence
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Medial ganglionic eminence|strain=Lhx6(BAC)-GFP|mouse stage=E13.5|library cell barcode bases=1-16|library molecular barcode bases=17-25|
Gene search
Download Count matrix (raw read counts, R sparse data object, 33.0 Mb)
Cell clustering results
Putative cell types Cajal-Retzius cells, Epithelial cells, Immature neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.