SRA SRA611700
SRS SRS2532371
SRR SRR6061129
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 6,590
Number of exp. genes 29,593 (median number of expressed genes per cell=1299)
Number of clusters 21
Tissue Cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Cortex|strain=Dlx6a-Cre; RCEloxP|mouse stage=P10|library cell barcode bases=1-16|library molecular barcode bases=17-25|
Gene search
Download Count matrix (raw read counts, R sparse data object, 29.9 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Epithelial cells, Erythroid-like and erythroid precursor cells, Microglia, Neuroendocrine cells, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.