Para-aortic lymph nodes
SRA SRA628029
SRS SRS3348009
SRR SRR7227542
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina NovaSeq 6000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 2,580
Number of exp. genes 23,574 (median number of expressed genes per cell=1705)
Number of clusters 10
Tissue Para-aortic lymph nodes
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=mLN-SPF|cell type=mLNs (small intestinal and colon/caecum-draining)|antibody=CD24- CD45-|index id=SI-GA-B6|index seq=CGTTAATC,GCCACGCT,TTACTCAG,AAGGGTGA|;GSM3162137: B6; Mus musculus; OTHER
Gene search
Download Count matrix (raw read counts, R sparse data object, 30.3 Mb)
Cell clustering results
Putative cell types Endothelial cells, Fibroblasts, Pericytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.