Intestinal organoid epithelial cells
SRA SRA628138
SRS SRS2659222
SRR SRR6253540
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument NextSeq 500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 1,138
Number of exp. genes 20,666 (median number of expressed genes per cell=2385)
Number of clusters 5
Tissue Intestinal organoid epithelial cells
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Intestinal organoid epithelial cells|strain=C57BL/6|treatment=treated with 0.5u/ml Interferon-gamma (IFN╬│)|genotype=Wild-type|;GSM2839416: CytoOrgs_IFNg_Rep1; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 6.7 Mb)
Cell clustering results
Putative cell types Enterocytes, Paneth cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.