Intestinal organoid epithelial cells
SRA SRA628138
SRS SRS2659232
SRR SRR6253551
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument NextSeq 500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 389
Number of exp. genes 19,780 (median number of expressed genes per cell=3150)
Number of clusters 4
Tissue Intestinal organoid epithelial cells
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Intestinal organoid epithelial cells|strain=C57BL/6|treatment=co-cultured with in vitro-differentiated Th2 cells|genotype=Wild-type|;GSM2839427: CytoOrgs_Th2; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 3.1 Mb)
Cell clustering results
Putative cell types Enterocytes, Paneth cells, T memory cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.