Pulmonary alveolar type i cells
SRA SRA631205
SRS SRS2690036
SRR SRR6294795
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,476
Number of exp. genes 27,095 (median number of expressed genes per cell=2573)
Number of clusters 9
Tissue Pulmonary alveolar type i cells
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=alveolar type I (AT1)|cell type=RFP+Pdpn+GFP-CD45- cells from tamoxifen treated Sftpc-CreER; Rosa26-Zsgreen; Hopx-RFP mice|age=postnatal day 3 (P3)|strain=mixed FVB/C57BL6|;GSM2858339: AT1_P3; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 21.8 Mb)
Cell clustering results
Putative cell types Clara cells, Ependymal cells, Pulmonary alveolar type I cells, Pulmonary alveolar type II cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.