SRA SRA637296
SRS SRS2749454
SRR SRR6365759
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,724
Number of exp. genes 24,951 (median number of expressed genes per cell=1409)
Number of clusters 7
Tissue Thymus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=FTOC_RA_3|background strain=C57BL6/J|genotype=wildtype|tissue=Fetal thymic organ culture|developmental day=E13.5 + 3 days in culture|rbc lysis buffer=Biolegend Cat# 420301|treatment=Retinoic acid (1 ┬ÁM; Sigma, R2625)|;GSM2883210: FTOC_RA_3; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 8.9 Mb)
Cell clustering results
Putative cell types Epithelial cells, Pericytes, T memory cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.