Intestinal crypt epithelium
SRA SRA639854
SRS SRS2766801
SRR SRR6387346
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 9,316
Number of exp. genes 27,054 (median number of expressed genes per cell=3166)
Number of clusters 9
Tissue Intestinal crypt epithelium
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population granuloma
Metadata (raw) source_name=Intestinal crypt epithelium|strain=C57Bl6J|tissue=Intestinal crypt epithelium|cell type=granuloma|infection status=6d H Polygyrus infection|cell markers=CD45-EpCam+CD44+Sca1+|;GSM2893434: Sca1pos; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 93.3 Mb)
Cell clustering results
Putative cell types B cells, Paneth cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.