Intestinal crypt epithelium
SRA SRA639854
SRS SRS2766801
SRR SRR6387346
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Full-length mRNA-seq No
Number of cells 9,316
Number of exp. genes 27,054 (median number of expressed genes per cell=3166)
Number of clusters 18
Tissue Intestinal crypt epithelium
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population granuloma
Metadata (raw) source_name=Intestinal crypt epithelium|strain=C57Bl6J|tissue=Intestinal crypt epithelium|cell type=granuloma|infection status=6d H Polygyrus infection|cell markers=CD45-EpCam+CD44+Sca1+|;GSM2893434: Sca1pos; Mus musculus; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types B cells, Cholangiocytes, Enterocytes, Fibroblasts, Paneth cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.