Intestinal crypt epithelium
SRA SRA639854
SRS SRS2766803
SRR SRR6387347
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 21,115
Number of exp. genes 27,221 (median number of expressed genes per cell=2112)
Number of clusters 24
Tissue Intestinal crypt epithelium
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population non-granuloma
Metadata (raw) source_name=Intestinal crypt epithelium|strain=C57Bl6J|tissue=Intestinal crypt epithelium|cell type=non-granuloma|infection status=6d H Polygyrus infection|cell markers=CD45-EpCam+CD44+Sca1-|;GSM2893435: Sca1neg; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 101.0 Mb)
Cell clustering results
Putative cell types Enterocytes, Oval cells, Paneth cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.