SRA SRA641134
SRS SRS2781556
SRR SRR6410935
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 948
Number of exp. genes 21,771 (median number of expressed genes per cell=2590)
Number of clusters 4
Tissue Microglia
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population CD11b+/CD45+
Metadata (raw) source_name=brain microglia|strain=C57BL/6J|tissue=brain|cell type=CD11b+/CD45+ microglia|age=adult|treatment=Repop D5|time=PLX5622 for 14 days, followed by CD treated for 5 days|;GSM2897925: Repop D5; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 22.8 Mb)
Cell clustering results
Putative cell types Macrophages, Microglia list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.