Subventricular zone
SRA SRA664819
SRS SRS3026289
SRR SRR6814860
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,003
Number of exp. genes 21,533 (median number of expressed genes per cell=974)
Number of clusters 7
Tissue Subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=adult subventricular zone|tissue=brain|brain region=subventricular zone, SVZ|fixation=none|Sex=male|number of animals=4|mouse strain=TCF/Lef_LacZ x Lrp2 <267> x FVBN|genotype=2 wildtype and 2 heterozygous littermate controls|;GSM3032682: an010_WT; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 5.2 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells, Microglia, Neuroendocrine cells, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.