Spinal cord
SRA SRA667466
SRS SRS3059941
SRR SRR6854181
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 4,383
Number of exp. genes 26,597 (median number of expressed genes per cell=1763)
Number of clusters 15
Tissue Spinal cord
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad21|age=p20|sex=male|tissue=SC|cell_index=SI-3A-G12|BioSampleModel=Model organism or animal|
Gene search
Download Count matrix (raw read counts, R sparse data object, 19.1 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.