Hippocampus (ca1)
SRA SRA667466
SRS SRS3059944
SRR SRR6854177
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,458
Number of exp. genes 26,450 (median number of expressed genes per cell=2376)
Number of clusters 14
Tissue Hippocampus (ca1)
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=vGat-tdTomato|isolate=CAint08, CAint09, CAint10|age=p60|sex=pooled male and female|tissue=CA1|cell_index=SI-3A-C12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse CA1
Gene search
Download Count matrix (raw read counts, R sparse data object, 14.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.