Hippocampus (ca1)
SRA SRA667466
SRS SRS3059946
SRR SRR6854176
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,347
Number of exp. genes 25,553 (median number of expressed genes per cell=2115)
Number of clusters 19
Tissue Hippocampus (ca1)
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=vGat-tdTomato|isolate=CAint08, CAint09, CAint10|age=p60|sex=pooled male and female|tissue=CA1|cell_index=SI-3A-B12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse CA1
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Putative cell types Astrocytes, Endothelial cells, Interneurons, Microglia, Neurons, Oligodendrocytes, Purkinje neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.