Dentate gyrus
SRA SRA667466
SRS SRS3059947
SRR SRR6854175
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,454
Number of exp. genes 26,172 (median number of expressed genes per cell=1552)
Number of clusters 11
Tissue Dentate gyrus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad19, Ad20|age=p12, p35|sex=pooled male and female|tissue=DentGyr|cell_index=SI-3A-E12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse DentGyr
Gene search
Download Count matrix (raw read counts, R sparse data object, 13.8 Mb)
Cell clustering results
Putative cell types Astrocytes, Cajal-Retzius cells, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.