SRA SRA667466
SRS SRS3059948
SRR SRR6854174
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,167
Number of exp. genes 24,789 (median number of expressed genes per cell=1617)
Number of clusters 8
Tissue Neo-cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=vGat-tdTomato|isolate=CAint08, CAint09, CAint10|age=p60|sex=pooled male and female|tissue=Ctx1.5|cell_index=SI-3A-D12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1.5
Gene search
Download Count matrix (raw read counts, R sparse data object, 9.0 Mb)
Cell clustering results
Putative cell types Interneurons, Neurons, Oligodendrocytes, Purkinje neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.