Neo-cortex
| SRA | SRA667466 |
| SRS | SRS3059948 |
| SRR | SRR6854174 |
| Species | Mus musculus |
| Sample (strain, genotype, etc.) | |
| Tumor | |
| Protocol | 10x chromium |
| Instrument | Illumina HiSeq 2500 |
| Full-length mRNA-seq | No |
| Number of cells | 2,167 |
| Number of exp. genes | 24,789 (median number of expressed genes per cell=1617) |
| Number of clusters | 12 |
| Tissue | Neo-cortex |
| Cell line (Y/N) | No |
| Primary adult tissue (Y/N) | Yes |
| Target cell population | |
| Metadata (raw) | strain=vGat-tdTomato|isolate=CAint08, CAint09, CAint10|age=p60|sex=pooled male and female|tissue=Ctx1.5|cell_index=SI-3A-D12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1.5 |
| Gene search |
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| Download |
Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ] |
| Putative cell types | Astrocytes, Endothelial cells, GABAergic neurons, Interneurons, Microglia, Neuroendocrine cells, Neurons, Oligodendrocytes, Unknown list all |
2d projection view
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Gene not found. It could be because it has no detectable expression or the gene does not exist.