SRA SRA667466
SRS SRS3059950
SRR SRR6854170
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 4,304
Number of exp. genes 27,385 (median number of expressed genes per cell=1620)
Number of clusters 14
Tissue Neo-cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad11|age=p23|sex=male|tissue=Ctx1|cell_index=SI-3A-F7|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1
Gene search
Download Count matrix (raw read counts, R sparse data object, 23.4 Mb)
Cell clustering results
Putative cell types Bergmann glia, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.