SRA SRA667466
SRS SRS3059953
SRR SRR6854169
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 4,945
Number of exp. genes 26,711 (median number of expressed genes per cell=1196)
Number of clusters 14
Tissue Hippocampus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad11|age=p23|sex=male|tissue=HC|cell_index=SI-3A-G7|BioSampleModel=Model organism or animal|;RNA-Seq of mouse HC
Gene search
Download Count matrix (raw read counts, R sparse data object, 20.7 Mb)
Cell clustering results
Putative cell types Astrocytes, Cajal-Retzius cells, Endothelial cells (brain), Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.