SRA SRA667466
SRS SRS3059953
SRR SRR6854169
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Full-length mRNA-seq No
Number of cells 4,945
Number of exp. genes 26,711 (median number of expressed genes per cell=1196)
Number of clusters 19
Tissue Hippocampus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad11|age=p23|sex=male|tissue=HC|cell_index=SI-3A-G7|BioSampleModel=Model organism or animal|;RNA-Seq of mouse HC
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Astrocytes, Cajal-Retzius cells, Endothelial cells, Fibroblasts, Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Smooth muscle cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.