SRA SRA667466
SRS SRS3059956
SRR SRR6854165
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,447
Number of exp. genes 26,737 (median number of expressed genes per cell=1600)
Number of clusters 16
Tissue Thalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad12|age=p24|sex=male|tissue=Thalamus|cell_index=SI-3A-E5|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Thalamus
Gene search
Download Count matrix (raw read counts, R sparse data object, 17.0 Mb)
Cell clustering results
Putative cell types Astrocytes, Choroid plexus cells, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.