Dorsal striatum
SRA SRA667466
SRS SRS3059957
SRR SRR6854166
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,521
Number of exp. genes 26,014 (median number of expressed genes per cell=1523)
Number of clusters 12
Tissue Dorsal striatum
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad12|age=p24|sex=male|tissue=StriatumDorsal|cell_index=SI-3A-B8|BioSampleModel=Model organism or animal|;RNA-Seq of mouse StriatumDorsal
Gene search
Download Count matrix (raw read counts, R sparse data object, 15.7 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Erythroid-like and erythroid precursor cells, Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Purkinje neurons, Sertoli cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.