Thalamus
SRA SRA667466
SRS SRS3059958
SRR SRR6854164
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,216
Number of exp. genes 26,486 (median number of expressed genes per cell=1566)
Number of clusters 15
Tissue Thalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad12|age=p24|sex=male|tissue=Thalamus|cell_index=SI-3A-F5|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Thalamus
Gene search
Download Count matrix (raw read counts, R sparse data object, 15.7 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Fibroblasts, Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.