Ventral midbrain
| SRA | SRA667466 |
| SRS | SRS3059967 |
| SRR | SRR6854156 |
| Species | Mus musculus |
| Sample (strain, genotype, etc.) | |
| Tumor | |
| Protocol | 10x chromium |
| Instrument | Illumina HiSeq 2500 |
| Read length (bp) | |
| Single or paired-end | SINGLE |
| Full-length mRNA-seq | No |
| Number of cells | 2,759 |
| Number of exp. genes | 24,192 (median number of expressed genes per cell=1122) |
| Number of clusters | 7 |
| Tissue | Ventral midbrain |
| Cell line (Y/N) | No |
| Primary adult tissue (Y/N) | No |
| Target cell population | |
| Metadata (raw) | strain=CD-1|isolate=Ad17|age=p21|sex=female|tissue=MidbrainVentral|cell_index=SI-3A-H4|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral |
| Gene search |
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| Download |
Count matrix (raw read counts, R sparse data object, 15.5 Mb)
Cell clustering results |
| Putative cell types | Astrocytes, Endothelial cells (brain), Microglia, Neurons, Oligodendrocytes list all |
2d projection view
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Gene not found. It could be because it has no detectable expression or the gene does not exist.