Ventral midbrain
SRA SRA667466
SRS SRS3059969
SRR SRR6854153
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,028
Number of exp. genes 24,203 (median number of expressed genes per cell=1107)
Number of clusters 8
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad17|age=p21|sex=female|tissue=MidbrainVentral|cell_index=SI-3A-G4|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 16.0 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Macrophages, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.