Hippocampus (ca1)
SRA SRA667466
SRS SRS3059971
SRR SRR6854151
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 1,177
Number of exp. genes 23,612 (median number of expressed genes per cell=1180)
Number of clusters 7
Tissue Hippocampus (ca1)
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=vGat-tdTomato|isolate=CAint05, CAint06, CAint07|age=p27|sex=pooled male and female|tissue=CA1|cell_index=SI-3A-H11|BioSampleModel=Model organism or animal|;RNA-Seq of mouse CA1
Gene search
Download Count matrix (raw read counts, R sparse data object, 5.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.