SRA SRA667466
SRS SRS3059977
SRR SRR6854145
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Full-length mRNA-seq No
Number of cells 3,211
Number of exp. genes 25,412 (median number of expressed genes per cell=1304)
Number of clusters 16
Tissue Neo-cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad05|age=p29|sex=female|tissue=Ctx1|cell_index=SI-3A-H2|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Putative cell types Astrocytes, Endothelial cells, Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.