SRA SRA667466
SRS SRS3059977
SRR SRR6854145
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,211
Number of exp. genes 25,412 (median number of expressed genes per cell=1304)
Number of clusters 10
Tissue Neo-cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad05|age=p29|sex=female|tissue=Ctx1|cell_index=SI-3A-H2|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1
Gene search
Download Count matrix (raw read counts, R sparse data object, 30.4 Mb)
Cell clustering results
Putative cell types Bergmann glia, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.