Hypothalamus
SRA SRA667466
SRS SRS3059980
SRR SRR6854142
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,991
Number of exp. genes 27,695 (median number of expressed genes per cell=1793)
Number of clusters 13
Tissue Hypothalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad25|age=p19|sex=female|tissue=Hypothalamus|cell_index=SI-3A-D9|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Hypothalamus
Gene search
Download Count matrix (raw read counts, R sparse data object, 21.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.