Dorsal midbrain
SRA SRA667466
SRS SRS3060008
SRR SRR6854114
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 5,241
Number of exp. genes 27,963 (median number of expressed genes per cell=1681)
Number of clusters 20
Tissue Dorsal midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad26|age=p20|sex=male|tissue=MidbrainDorsal|cell_index=SI-3A-B10|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainDorsal
Gene search
Download Count matrix (raw read counts, R sparse data object, 24.8 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Fibroblasts, Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.