Ventral midbrain
SRA SRA667466
SRS SRS3060012
SRR SRR6854110
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 5,313
Number of exp. genes 26,829 (median number of expressed genes per cell=1345)
Number of clusters 16
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad26|age=p20|sex=male|tissue=MidbrainVentral|cell_index=SI-3A-F10|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 22.1 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Fibroblasts, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.