Ventral midbrain
SRA SRA667466
SRS SRS3060013
SRR SRR6854109
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 1,582
Number of exp. genes 20,759 (median number of expressed genes per cell=853)
Number of clusters 7
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad26|age=p20|sex=male|tissue=MidbrainVentral|cell_index=SI-3A-H10|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 8.7 Mb)
Cell clustering results
Putative cell types Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.