Ventral midbrain
SRA SRA667466
SRS SRS3060015
SRR SRR6854107
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 6,023
Number of exp. genes 27,216 (median number of expressed genes per cell=1535)
Number of clusters 17
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad26|age=p20|sex=male|tissue=MidbrainVentral|cell_index=SI-3A-E10|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 26.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Pericytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.