Spinal cord
SRA SRA667466
SRS SRS3060017
SRR SRR6854105
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 6,372
Number of exp. genes 26,764 (median number of expressed genes per cell=1138)
Number of clusters 15
Tissue Spinal cord
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=Swiss|isolate=Ad27, Ad28|age=p21-23|sex=pooled male and female|tissue=SC|cell_index=SI-3A-B11|BioSampleModel=Model organism or animal|;RNA-Seq of mouse SC
Gene search
Download Count matrix (raw read counts, R sparse data object, 21.8 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Macrophages, Oligodendrocyte progenitor cells, Oligodendrocytes, Trigeminal neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.