Cortex 1
SRA SRA667466
SRS SRS3060022
SRR SRR6854100
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 4,411
Number of exp. genes 25,718 (median number of expressed genes per cell=1296)
Number of clusters 15
Tissue Cortex 1
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad05|age=p29|sex=female|tissue=Ctx1|cell_index=SI-3A-A1|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx1
Gene search
Download Count matrix (raw read counts, R sparse data object, 39.8 Mb)
Cell clustering results
Putative cell types Astrocytes, Bergmann glia, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.