Dorsal striatum
| SRA | SRA667466 |
| SRS | SRS3060027 |
| SRR | SRR6854095 |
| Species | Mus musculus |
| Sample (strain, genotype, etc.) | |
| Tumor | |
| Protocol | 10x chromium |
| Instrument | Illumina HiSeq 2500 |
| Read length (bp) | |
| Single or paired-end | SINGLE |
| Full-length mRNA-seq | No |
| Number of cells | 2,147 |
| Number of exp. genes | 24,355 (median number of expressed genes per cell=1648) |
| Number of clusters | 10 |
| Tissue | Dorsal striatum |
| Cell line (Y/N) | No |
| Primary adult tissue (Y/N) | No |
| Target cell population | |
| Metadata (raw) | strain=CD-1|isolate=Ad05|age=p29|sex=female|tissue=StriatumDorsal|cell_index=SI-3A-D3|BioSampleModel=Model organism or animal|;RNA-Seq of mouse StriatumDorsal |
| Gene search |
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| Download |
Count matrix (raw read counts, R sparse data object, 9.6 Mb)
Cell clustering results |
| Putative cell types | Bergmann glia, Endothelial cells (brain), Ependymal cells, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Purkinje neurons, Unknown list all |
2d projection view
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Gene not found. It could be because it has no detectable expression or the gene does not exist.