Dorsal midbrain
SRA SRA667466
SRS SRS3060033
SRR SRR6854091
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,748
Number of exp. genes 25,676 (median number of expressed genes per cell=1339)
Number of clusters 10
Tissue Dorsal midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad10|age=p22|sex=female|tissue=MidbrainDorsal|cell_index=SI-3A-D5|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainDorsal
Gene search
Download Count matrix (raw read counts, R sparse data object, 14.1 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Fibroblasts, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.