Hippocampus (ca1)
SRA SRA667466
SRS SRS3060035
SRR SRR6854087
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,631
Number of exp. genes 25,178 (median number of expressed genes per cell=1574)
Number of clusters 9
Tissue Hippocampus (ca1)
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=5ht3a-EGFP|isolate=CAint01, CAint02, CAint03, CAint04|age=p23|sex=pooled male and female|tissue=CA1|cell_index=SI-3A-D4|BioSampleModel=Model organism or animal|;RNA-Seq of mouse CA1
Gene search
Download Count matrix (raw read counts, R sparse data object, 15.4 Mb)
Cell clustering results
Putative cell types Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.