Cortex 3
SRA SRA667466
SRS SRS3060040
SRR SRR6854083
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,324
Number of exp. genes 26,204 (median number of expressed genes per cell=1359)
Number of clusters 9
Tissue Cortex 3
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad10|age=p22|sex=female|tissue=Ctx3|cell_index=SI-3A-D7|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Ctx3
Gene search
Download Count matrix (raw read counts, R sparse data object, 18.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.