SRA SRA667466
SRS SRS3060042
SRR SRR6854080
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,114
Number of exp. genes 23,415 (median number of expressed genes per cell=1043)
Number of clusters 5
Tissue Hypothalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=Swiss|isolate=Ad33|age=p25-27|sex=male|tissue=Hypothalamus|cell_index=SI-3A-F12|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Hypothalamus
Gene search
Download Count matrix (raw read counts, R sparse data object, 9.6 Mb)
Cell clustering results
Putative cell types Macrophages, Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.