Ventral midbrain
SRA SRA667466
SRS SRS3060043
SRR SRR6854076
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 4,617
Number of exp. genes 25,226 (median number of expressed genes per cell=1208)
Number of clusters 9
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=Swiss|isolate=Ad33, Ad34|age=p25-27|sex=pooled male and female|tissue=MidbrainVentral|cell_index=SI-3A-A2|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 19.8 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Microglia, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.