Dorsal midbrain
SRA SRA667466
SRS SRS3060045
SRR SRR6854075
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 6,426
Number of exp. genes 27,053 (median number of expressed genes per cell=1163)
Number of clusters 12
Tissue Dorsal midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=Swiss|isolate=Ad33, Ad34|age=p25-27|sex=pooled male and female|tissue=MidbrainDorsal|cell_index=SI-3A-H1|BioSampleModel=Model organism or animal|;RNA-Seq of mouse MidbrainDorsal
Gene search
Download Count matrix (raw read counts, R sparse data object, 21.2 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Macrophages, Neurons, Oligodendrocytes, Purkinje neurons list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.