Somatosensory cortex
SRA SRA667466
SRS SRS3060049
SRR SRR6854072
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 5,624
Number of exp. genes 26,606 (median number of expressed genes per cell=1042)
Number of clusters 15
Tissue Somatosensory cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad02|age=p29|sex=missing|tissue=SScortex|cell_index=SI-3A-B1|BioSampleModel=Model organism or animal|;RNA-Seq of mouse SScortex
Gene search
Download Count matrix (raw read counts, R sparse data object, 49.6 Mb)
Cell clustering results
Putative cell types Bergmann glia, Endothelial cells (brain), Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.